芽孢杆菌的系统进化及其属分类学特征

福建农业学报 ›› 2008, Vol. ›› Issue (4): 436-449.

芽孢杆菌的系统进化及其属分类学特征

刘国红^1,2, 刘波¹, 林乃铨², 林营志¹

1. 福建省农业科学院农业生物资源研究所, 福建, 福州, 350003;
2. 福建农林大学生物防治研究所, 福建, 福州, 350002

收稿日期:2008-10-06 修回日期:2008-12-09 出版日期:2008-10-15 发布日期:2008-10-15
通讯作者: 刘波(1957- ),男,博士,研究员,从事生物技术与生物农药研究(E-mail:fzliubo@163.com)
基金资助:
国家863项目(2006AA10A211);福建发改委项目([2006]781);福建省财政专项-福建省农科院科技创新团队建设基金(STIF-Y03)

Phyletic evolution and taxonomic characteristics of Bacillus

LIU Guo-hong^1,2, LIU Bo¹, LIN Nai-quan², LIN Ying-zhi¹

1. Agrobiological Resource Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian 350003, China;
2. Biological Control Research Institute, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China

Received:2008-10-06 Revised:2008-12-09 Online:2008-10-15 Published:2008-10-15

摘要/Abstract

摘要： 传统的芽孢杆菌鉴定主要是根据表型特征,在《芽孢杆菌文献研究》列出了芽孢杆菌属的244个种。随着分类研究方法的发展,尤其是多相分类法的应用,芽孢杆菌属的分类发生了很大的变化,有很多种从芽孢杆菌属中分化出来另建新属。本文主要以《伯杰氏系统细菌学手册》第2版为依据,阐述产芽孢的芽孢杆菌的分化、确立依据及其模式菌株的主要特征。根据产芽孢与否、16S rRNA等的特征,芽孢杆菌分化出22个属,其中位于芽孢杆菌科的属有15个,位于非芽孢杆菌科的属有7个。此外还有13个只是在命名书写上和芽孢杆菌Bacillus相似。

关键词: 芽孢杆菌, 近缘属, 分类特征

Abstract: The traditional classification of Bacillus was done mainly based on the phenotypic characteristics.There were 244 species of Bacillus cited in the book of the"Literature Review on Bacillus"by Liu(2006).With the development of new identification methodologies,especially the polyphasic taxonomical method,changes in the taxonomy of Bacillus are emerging.Many species have been re-classified from the genus into new genera.Based on the second edition of "Bergey's Manual of Systematic Bacteriology" published in 2004,this paper discusses the evolutional evidence,as well as the characterictics of the typical species of Bacillus related genera.According to the spore-forming,16S rRNA and other characteristics,22 Bacillus related genera have been separated from Bacillus.Of the 22 genera,15 belong to Bacillaceae and 7 are non-Bacillaceae.There are 13 genera that are only Bacillus in name.

Key words: Bacillus, phyletic evolution, taxonomic characteristics

中图分类号:

R378.7

刘国红, 刘波, 林乃铨, 林营志. 芽孢杆菌的系统进化及其属分类学特征[J]. 福建农业学报, 2008, (4): 436-449.

LIU Guo-hong, LIU Bo, LIN Nai-quan, LIN Ying-zhi. Phyletic evolution and taxonomic characteristics of Bacillus[J]. Fujian Journal of Agricultural Sciences, 2008, (4): 436-449.

参考文献

[1] R E•布钦南,N E•吉本斯.伯杰细菌鉴定手册(第8版)[M].北京:科学出版社,1984.
[2] 刘波.芽孢杆菌文献研究[M].广州:广东旅游出版社,2006.
[3] ASH C,FARROW J A E,WALLBANKS S,et al.Phylogenetic heterogeneity of the genus Bacillus revealed by.comparative analysis of small-subunit-ribosomal RNA sequences[J].Lett Appl Microbiol,1991,13:202-206.
[4] STALEY J T,KRIEG N R.Bergey's Mannual of Systemactic Bacteriology[M].The Williams & Wilkins Co.,Baltimore,1984,1:11.
[5] 陶天申,杨瑞馥,东秀珠.原核生物系统学[M].北京:化学工业出版社,2007.
[6] GEORGE M G,JULI A B,TIMOTHY G L,et al.Taxonomic outline of the prokaryotes bergey's mannual of systematic bacteriology,second edition Release 5.0[M].Springer,New York,2004.
[7] 韩延平,杨瑞馥.需氧芽孢杆菌分类学研究进展[J].微生物免疫学进展,2001,29(4):73-78.
[8] NIIMURA Y,KOH E,YANAGIDA F,et al.Amphibacillus xylanus gen.nov.,sp.nov.,a facultatively anaerobic sporeforming xylan-digesting bacterium which lacks cytochrome,quinone,and catalase[J].Int J Syst Bacteriol,1990,40:297-301.
[9] WISOTZKEY J D,JURTSHUK J P,FOX G E,et al.Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius,Bacillus acidoterrestris,and Bacillus cycloheptanicus and proposal for creation of a new genus,Alicyclobacillus gen.nov[J].Int J Syst Bacteriol,1992,42:263-269.
[10] GOLOVACHEVA R S,KARAVAIKO G I.Sulfobacillus,a new genus of thermophilic sporeforming bacteria[J].Mikrobiologiya,1978,47:815-822.
[11] SPRING S,LUDWIG W,MARQUEZ M C,et al.Halobacillus gen.nov.,with descriptions of Halobacillus litoralis sp.nov.,and Halobacillus trueperi sp.nov.,and transfer of Sporosarcina halophila to Halobacillus halophilus.comb.nov[J].Int J Syst Bacteriol,1996,46:492-496,
[12] WAIN M,TINDALL B J,SCHUMANN P,et al.Gracilibacillus gen.nov.,with description of Gracilibacillus halotolerans gen.nov.,sp.nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri.comb.nov.,and Bacillus salexigens to the genus Salibacillus gen.nov.,as Salibacillus salexigens.comb.nov[J].Int J Syst Bacteriol,1999,49:821-831.
[13] HEYNDRICKX M,LEBBE L,KERSTERS K,et al.Virgibacillus:a new genus to accommodate Bacillus pantothentics (Proom and Knight1950).Emended description of Virgibacillus pantothenticus.Int[J].J Syst Bacteriol,1998,48:99-106.
[14] PIKUTA E,LYSENKO A,CHUVILSKAYA N,et al.Anoxybacillus pushchinensis gen.nov.,sp.nov.,a novel anaerobic alkaliphilic,moderately thermophilic bacterium from manure,and description of Anoxybacillus flavithermus.comb.nov[J].Int J Syst Evol Microbiol,2000,50:2109-2117.
[15] YOON,J H,WEISS,LEE N,et al.Jeotgalibacillus alimentarius gen.nov.,sp.nov.,a novel bacterium isolated from jeotgal with L-lysine in the cell wall,and reclassification of Bacillus marinus R ger 1983 as Marinibacillus marinus gen.nov.,comb.nov[J].Int J Syst Evol Microbiol,2001,51:2087-2093.
[16] NAZINA T N,TOUROVA T P,POLTARAUS A B,et al.Taxonomic study of aerobic thermophilic bacilli:descriptions of Geobacillus subterraneus gen.nov.,sp.nov.and Geobacillus uzenensis sp.nov.from petroleum reservoirs and transfer of Bacillus stearothermophilus,Bacillus thermocatenulatus,Bacillus thermoleovorans,Bacillus kaustophilus,Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the new.combinations G.stearothermophilus,G.thermocatenulatus,G.thermoleovorans,G.kaustophilus,G.thermoglucosidasius and G.thermodenitrificans[J].Int J Syst Evol Microbiol,2001,51:433-446.
[17] FORTINA M G,PUKALL R,SCHUMANN P,et al.Ureibacillus gen.nov.,a new genus to accomodate Bacillus thermosphaericus (Andersson et al.1995),emendation of Ureibacillus thermosphaericus and description of Ureibacillus terrenus sp.nov[J].Int J Syst Evol Microbiol,2001,51:447-455.
[18] SCHLESNER H,LAWSON P A,COLLINS M D,et al.Filobacillus milensis gen.nov.,sp.nov.,a new halophilic spore-forming bacterium with Orn-D-Glu-type peptidoglycan[J].Int J Syst Evol Microbiol,2001,51:425-431.
[19] YOON J H,KANG K H,PARK Y H.Lentibacillus salicampi gen.nov.,sp.nov.,a moderately halophilic bacterium isolated from a salt field in Korea[J].Int J Syst Evol Microbiol,2002,52:2043-2048.
[20] LU J,NOGI Y,TAKAMI H.Oceanobacillus iheyensis gen.nov.,sp.nov.,a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge[J].FEMS Microbiol Lett,2001,205:291-297.
[21] ISHIKAWA M,ISHIZAKI S,YAMAMOTO Y,et al.Paraliobacillus ryukyuensis gen.nov.,sp.nov.,a new Gram-positive,slightly halophilic,extremely halotolerant,facultative anaerobe isolated from a decomposing marine alga[J].J Gen Appl Microbiol,2002,48:269-279.
[22] CAROL ASH,FERGUS G,PRIEST,M.David Collins.Molecular identificationof rRNA group 3 bacilli (Ash,Farrow,Wallbanks and Collins) using a PCR probe test.Proposal for the creation of a new genus Paenibacillus[J].Antonie van Leeuwenhoek,1993,64:253-260.
[23] SHIDA O,TAKAGI H,KADOWAKI K,et al.Proposal for two new genera,Brevibacillus gen.nov.and Aneurinibacillus gen.nov[J].Int J Syst Bacteriol,1996,46:939-946.
[24] TOUZELJ P,O'DONOHUE M,DEBEIRE P,et al.Thermobacillus xylanilyticus gen.nov.,sp.nov.,a new aerobic thermophilic xylan-degrading bacterium isolated from farm soil[J].Int J Syst Evol Microbiol,2000,50:315-320.